Publications
2022
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Turner NL .. Tolias AS .. Seung HS (2022). Reconstruction of neocortex: Organelles,
compartments, cells, circuits and activity. Cell Feb 23: doi: 10.1016/j.cell.2022.01.023
Link
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Lusk SJ, McKinney A, Hunt PJ, Fahey PG, Patel J, Chang A, Sun JJ, Martinez VK, Zhu
PJ, Egbert JR, Allen G, Jiang X, Arenkiel BR, Tolias AS, Costa-Mattioli M, Ray
RS.(2022). A CRISPR toolbox for generating intersectional genetic mouse models for
functional, molecular and anatomical circuit mapping. BMC Biol. 20(1).
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Kudithipudi D. Tolias AS .. Siegelmann H. Biological underpinnings for lifelong
learning machines. Nature Machine Intelligence: 4, pages 196–210 (2022)
Link
2021
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Scala, F., Kobak, D., Bernabucci, M., Bernaerts, Y., Cadwell, C.R., Castro, J.R.,
Hartmanis, L., Jiang, X., Laturnus, S., Miranda, E. and Mulherkar, S., Tan, Z., Yao, Z.,
Zeng, R., Sandberg, R., Berens, P., and Tolias A.S., (2021). Phenotypic variation of
transcriptomic cell types in mouse motor cortex. Nature, 598(7879): 144-150.
Link
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BRAIN Initiative Cell Census Network (BICCN) et al., including Tolias A.S. as co-
corresponding author (2021). A multimodal cell census and atlas of the mammalian
primary motor cortex. Nature doi: 10.1038/s41586-021-03950-0
Link
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Hu SX, Arefin MdR, Nguyen V, Dipani A, Pitkow X, Tolias AS (2021) AvaTr: One-
Shot Speaker Extraction with Transformers arXiv:2105.00609; accepted in InterSpeech
PDF
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Yang, Q., Walker, E., Cotton, R.J., Tolias, A.S. and Pitkow, X., (2021). Revealing
nonlinear neural decoding by analyzing choices. BioRxiv, p.332353. accepted in Nature
Communications
Link
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Bashiri M., Walker E., Lurz K., Jagadish A., Muhammad T., Ding Z., Ding Z., Tolias A.S ., Sinz F (2021)
A flow-based latent state generative model of neural population responses to natural images NeurIPS (Advances in Neural Information Processing
Systems 34).
PDF
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Burg, M.F., Cadena, S.A., Denfield, G.H., Walker, E.Y., Tolias, A.S., Bethge, M. and
Ecker*, A.S., (2021). Learning divisive normalization in primary visual cortex. PLOS
Computational Biology, 17(6), p.e1009028.
Link
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Shah Safarani, Arne Nix, Konstantin Willeke, Santiago A. Cadena, Kelli Restivo, George Denfield, Andreas S. Tolias and Fabian H. Sinz. (2021)
Towards robust vision by multi-task learning on monkey visual cortex. arXiv
NeurIPS 2021 (Neural Information Processing Systems)
Link
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Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert AA, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J , Zhuang J, Nandi A, Hu B, Buchanan J,
Takeno MM, Torres R, Mahalingam, Bumbarger DJ, Li Y, Chartrand T, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A , Tartavull I, Popovych S, Wong W, Castro
M, Jordan CS, Froudarakis E, Becker L, Suckow S, Reimer J, Tolias AS, Anastassiou C, H. Seung HS, R. Reid RC and Maçarico da Costa N (2021).
Structure and function of axo-axonic inhibition Elife 10 (e73783)
Link
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Mohammad Bashiri, Edgar Y. Walker, Konstantin-Klemens Lurz, Akshay Kumar
Jagadish, Taliah Muhammad, Zhiwei Ding, Zhuokun Ding, Andreas S. Tolias and
Fabian H. Sinz. (2021) A flow-based latent stage generative model of neural population
responses to nautral images. NeurIPS 2021 (Neural Information Processing Systems)
PDF
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Kobak, D., Bernaerts, Y., Weis, M.A., Scala, F., Tolias, A.S. and Berens, P., (2021).
Sparse reduced‐rank regression for exploratory visualisation of paired multivariate data.
Journal of the Royal Statistical Society: Series C (Applied Statistics). Link
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Tehovnik EJ, Froudarakis E, Scala F, Smirnakis SM, Patel SS, Tolias AS. Visuomotor
control in mice and primates. Neurosci Biobehav Rev. 2021 Aug 17;130:185-200. doi:
10.1016/j.neubiorev.2021.08.009. Epub ahead of print. PMID: 34416241.
Link
2020
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Edgar Y Walker, R. James Cotton, Wei Ji Ma, Andreas S Tolias (2020) A neural basis of
probabilistic computation in visual cortex.
Nature Neuroscience. Jan.23(1), 122-129. doi: 10.1038/s41593-019-0554-5 [Epub] 2019 Dec 23. PMID: 31873286 Link
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Cadwell CR, Scala F, Fahey PG, Kobak D, Mulherkar S, Sinz FH, Papadopoulos S, Tan ZH, Johnsson P, Hartmanis L, Li S, Cotton RJ, Tolias KF, Sandberg R, Berens P, Jiang X, Tolias AS.
(2020) Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex.
Elife. 2020 Mar5;9. pii: e52951. doi: 10.7554/eLife.52951 [Epub ahead of print] Link
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van de Ven, G.M., Siegelmann, H.T. and Tolias, A.S. (2020)
Brain-inspired replay for continual learning with artificial neural networks.
Nature Communications, 11(1), pp.1-14. doi: 10.1038/s41467-020-17866-2 Link
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Cotton, R.J., Sinz, F. and Tolias, A. (2020)
Factorized Neural Processes for Neural Processes: K-Shot Prediction of Neural Responses.
Advances in Neural Information Processing Systems, 33. arXiv:2010.11810 Link
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Froudarakis, E., Cohen, U., Diamantaki, M., Walker, E.Y., Reimer, J., Berens, P., Sompolinsky, H. and Tolias, A.S. (2020)
Object manifold geometry across the mouse cortical visual hierarchy.
bioRxiv. doi: 10.1101/2020.08.20.258798 Link
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Shan Shen, Xiaolong Jiang, Federico Scala, Jiakun Fu, Paul Fahey, Dmitry Kobak, Zhenghuan Tan, Jacob Reimer,
Fabian H. Sinz, Andreas Tolias (2020)
Distinct organization of two cortico-cortical feedback pathways.
bioRxiv. doi: 10.1101/2020.02.27.968792 Link
Nature Communications, under revision.
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Zhou P, Reimer J, Zhou D, Pasarkar, Pasarkar A, Kinsella I, Froudarakis E, Yatsenko D, Fakey P, Bodor A, Buchanan J, Bumbarger D, Mahalingam G, Torres R, Dorkenwald S, Ih D, Lee K, Lu R, Macrona T, Wu J, da Costa N, Reid C, Tolias AS, Paninski L.
(2020) EASE-EM-Assisted Source Extraction from calcium imaging data
bioRxiv. doi: 10.1101/2020.03.25.007468. Link
Nature Neuroscience, under revision.
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Shemesh, O.A., Linghu, C., Piatkevich, K.D., Goodwin, D., Celiker, O.T., Gritton, H.J., Romano, M.F., Gao, R., Yu, C.C.J., Tseng, H.A. and Bensussen, S., et al.
(2020) Precision calcium imaging of dense neural populations via a cell body-targeted calcium indicator.
Neuron, 107(3), pp.470-486. doi: 10.1016/j.neuron.2020.05.029
Link
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Moreaux, L.C., Yatsenko, D., Sacher, W.D., Choi, J., Lee, C., Kubat, N.J., Cotton, R.J., Boyden, E.S., Lin, M.Z., Tian, L. and Tolias, A.S., et al.
(2020) Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time.
Neuron. 108(1), pp.66-92. doi: 10.1016/j.neuron.2020.09.043. Link
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Mengye Ren, Eleni Triantafillou, Kuan-Chieh Wang, James Lucas, Jake Snell, Xaq Pitkow, Andreas S. Tolias, Richard Zemel
(2020) Flexible Few-Shot Learning with Contextual Similarity.
arXiv:2012.05895 Link
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Baker C, Froudarakis E, Yatsenko D, Tolias AS, Rosenbaum R. (2020)
Inference of synaptic connectivity and external variability in neural microcircuits.
Journal of Computational Neuroscience. doi: 10.1007/s10827-020-00739-4. [Epub ahread of print] PMID: 32080777 Link
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Yuste, R., Hawrylycz, M., Aalling, N., Aguilar-Valles, A., Arendt, D., Arnedillo, R.A., Ascoli, G.A., Bielza, C., Bokharaie, V., Bergmann, T.B. and Bystron, I., et al.
(2020) A community-based transcriptomics classification and nomenclature of neocortical cell types.
Nature Neuroscience. Aug.24(23)pp. 1456-1468. Link
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Turner, N.L., Macrina, T., Bae, J.A., Yang, R., Wilson, A.M., Schneider-Mizell, C., Lee, K., Lu, R., Wu, J., Bodor, A.L. and Bleckert, A.A., et al.
(2020) Multiscale and multimodal reconstruction of cortical structure and function.
bioRxiv. doi: 10.1101/2020.10.14.338681 Link
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Qianli Yang, Edgar Walker, R. James Cotton, Andreas S. Tolias, Xaq Pitkow (2020) Revealing nonlinear neural decoding by analyzing choices.
bioRxiv. doi: 10.1101/332353 Link
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Schnieder-Mizell C …. Tolias AS ..da Costa NM (2020) Chandelier cell anatomy and function reveal a variability distributed but common signal.
bioRxiv. doi: 10.1101/2020.03.31.018952 Link
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Dorkenwald S, ...Tolias AS, ..Seung S (2020) Binary and analog variation of synapses between pyramidal neurons.
bioRxiv. doi: 10.1101/2019.12.29.890319 Link
2019
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Zhe Li, Wieland Brendel, Edgar Y. Walker, Erick Cobos, Taliah Muhammad, Jacob Reimer,
Matthias Bethge, Fabian H. Sinz, Xaq Pitkow, Andreas S. Tolias (2019) Learning From Brains
How to Regularize Machines.
arXiv
Link
NeurIPS 2019 (Neural Information Processing Systems)
Link
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van de Ven GM, Tolias AS (2019)
Three scenarios for continual learning.
arXiv
arxiv:1904.07734
Link
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Cody Baker, Emmanouil Froudarakis, Dimitri Yatsenko, Andreas S. Tolias, Robert Rosenbaum
(2019) Inference of Synaptic Connectivity and External Variability in Neural Microcircuits.
bioRxiv doi: 10.1101/650069
Link
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Max F. Günthner, Santiago A. Cadena, George H. Denfield, Edgar Y. Walker, Andreas S. Tolias, Matthias Bethge,
Alexander
S. Ecker (2019) Learning Divisive Normalization in Primary Visual Cortex.
bioRxiv.
doi:10.1101/767285
Link
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Dmitry Kobak, Yves Bernaerts, Marissa A. Weis, Federico Scala, Andreas Tolias, Philipp
Berens. (2019) Sparse reduced-rank regression for exploratory visualization of multimodal data
sets.
bioRxiv doi: 10.1101/302208
Link
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Paul G. Fahey, Taliah Muhammad, Cameron Smith, Emmanouil Froudarakis, Erick Cobos,
Jiakun Fu, Edgar Y. Walker, Dimitri Yatsenko, Fabian H. Sinz, Jacob Reimer, Andreas S.
Tolias. (2019) A global map of orientation tuning in mouse visual cortex.
bioRxiv doi: 10.1101/745323
Link
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Cadwell CR, Scala F, Fahey PG, Kobak D, Sinz FH, Johnsson P, Li S, Cotton RJ, Sandberg R, Berens P, Jiang X,
Tolias AS (2019)
Cell type composition and circuit organization of neocortical radial clones
bioRxiv
526681; doi:10.1101/526681
Link
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Egbert JR, Fahey PG, Reimer J, Owen CM, Evsikov AV, Nikolaev VO, Griesbeck O, Ray RS,
Tolias AS, Jaffe LA. (2019) Follicle-stimulating hormone and luteinizing hormone increase Ca2+
in the granulosa cells of mouse ovarian follicles.
Biol Reprod. doi:10.1093/biolre/ioz085
Link
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Or A. Shemesh, Andreas Tolias, et al. (2019) Precision calcium imaging of dense neural
populations via a cell body-targeted calcium indicator.
bioRxiv doi: 10.1101/773069
Link
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Walker EY, Sinz FH, Cobos E, Muhammad T, Froudarakis E, Fahey PG, Ecker AS,
Reimer J, Pitkow X, Tolias AS (2019) Inception loops discover what excites neurons
most using deep predictive models.
Nature Neuroscience. doi: 10.1038/s41593-019-0517-x
Link
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Sinz FH, Pitkow X, Reimer J, Bethge M, Tolias AS. (2019) Engineering a Less Artificial
Intelligence.
Neuron
doi: 10.1016/j.neuron.2019.08.034
Link
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Froudarakis, E., Fahey, P.G., Reimer, J., Smirnakis, S.M., Tehovnik, E.J., Tolias, A.S., 2019. The Visual Cortex in
Context.
Annual Review of Vision Science 5, 317–339.
doi:10.1146/annurev-vision-091517-034407
Link
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Scala F, Kobak D, Shan S, Bernaerts Y, Laturnus S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH,
Papadopoulos S, Patel SS, Sandberg R, Berens P, Jiang X, Tolias AS. Layer 4 of mouse neocortex differs in cell types and
circuit organization between sensory areas.
Nat Commun. 2019 Sep 13;10(1):4174.
doi:10.1038/s41467-019-12058-z
Link
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Cadena SA, Denfield GH, Walker EY, Gatys LA, Tolias AS, Bethge M, and Ecker AS (2019) Deep convolutional models improve
predictions of macaque V1 responses to natural images
PLoS Comput Biol.
doi: 10.1371/journal.pcbi.1006897
Link
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Liu G, Froudarakis E, Patel JM, Kochukov MY, Pekarek B, Hunt PJ, Patel M, Ung K, Fu CH, Jo J, Lee HK, Tolias AS,
Arenkiel BR. (2019) Target specific functions of EPL interneurons in olfactory circuits
Nat Commun.
doi: 10.1038/s41467-019-11354-y
Link
2018
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Walker EY, Sinz FH, Foudarakis E, Fahey PG, Muhammad T, Ecker AS, Cobos E, Reimer J, Pitkow X, Tolias AS (2018) Inception
in visual cortex: in vivo-silico loops reveal most exciting images
bioRxiv doi:10.1101/506956
Link
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Scala F, Kobak D, Shan S, Bernaerts Y, Laturnus S, Cadwell CR, Hartamis L, Castro J, Tan ZH, Sandberg R, Berens P, Jiang
X, Tolias AS. (2018) Neocortical layer 4 in adult mouse differs in major cell types and circuit organization between primary
sensory areas
bioRxiv doi:10.1101/507293
Link
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Edgar Y Walker, R. James Cotton, Wei Ji Ma, Andreas S Tolias (2018) A neural basis of probabilistic computation in visual
cortex
bioRxiv 365973; doi:10.1101/365973
Link
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Gido M. van de Ven, Andreas S. Tolias (2018). Generative replay with feedback connections as a general strategy for continual
learning.
arXiv: https://arxiv.org/abs/1809.10635
Link
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Sinz FH, Ecker AS, Fahey PG, Walker EY, Cobos E, Froudarakis E, Yatsenko D, Pitkow X, Reimer J, Tolias AS (2018) Stimulus
domain transfer in recurrent models for large scale cortical population prediction on video.
NIPS
(Neural Information Processing Systems)
Link
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Subramaniyan M, Ecker AS, Patel SS, Cotton RJ, Bethge M, Pitkow X, Berens P, Tolias AS (2018) Faster processing of moving
compared to flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion.
Journal of Neurophysiology.
Aug 22 2018(Epub)
. doi: 10.1152/jn.00792.2017
Link |
Data
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Dimitri Yatsenko, Edgar Y. Walker, Andreas S. Tolias (2018) DataJoint: A Simpler Relational Data Model
arXiv: https://arxiv.org/abs/1807.11104
Link
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Alexander S. Ecker, Fabian H. Sinz, Emmanouil Froudarakis, Paul G. Fahey, Santiago A. Cadena, Edgar Y. Walker, Erick Cobos,
Jacob Reimer, Andreas S. Tolias, Matthias Bethge (2018) A rotation-equivariant convolutional neural network model of primary
visual cortex
arXiv: https://arxiv.org/abs/1809.10504
Link
- E. Kelly Buchanan, Ian Kinsella, Ding Zhou, Rong Zhu, Pengcheng Zhou, Felipe Gerhard, John Ferrante, Ying Ma, Sharon Kim,
Mohammed Shaik, Yajie Liang, Rongwen Lu, Jacob Reimer, Paul Fahey, Taliah Muhammad, Graham Dempsey, Elizabeth Hillman, Na
Ji, Andreas Tolias, Liam Paninski (2018) Penalized matrix decomposition for denoising, compression, and improved demixing
of functional imaging data.
bioRxiv
334706;
doi: 10.1101/334706
Link
- Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias AS (2018) Attentional fluctuations induce shared variability in macaque primary visual cortex.
Nat Commun.
9(1)
: 2654 . doi: 10.1038/s41467-018-05123-6
Link
- Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW,
Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE,
Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge
M (2018) Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
PLoS Comput Biol.
14(5)
:e1006157 . doi: 10.1371/journal.pcbi.1006157
Link
2017
- Cadwell CR, Scala F, Li S, Livrizzi G., Shen S., Sandberg R, Jiang X & Tolias AS(2017) Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq Nature Protocols 12, 2531–2553 (2017) Link
- Cadwell CR, Sandberg R, Jiang X, Tolias AS (2017). Q&A: using Patch-seq to profile single cells. BMC Biol. Jul 6;15(1):58. doi: 10.1186/s12915-017-0396-0. Link
- S. A. Cadena, G. H. Denfield, E. Y. Walker, L. A. Gatys, A. S. Tolias, M. Bethge, and A. S. Ecker (2017) Deep convolutional models improve predictions of macaque V1 responses to natural images bioRxiv, 2017 Link
- G. H. Denfield, A. S. Ecker, T. J. Shinn, M. Bethge, and A. S. Tolias (2017) Attentional fluctuations induce shared variability in macaque primary visual cortex bioRxiv, 2017 Link
- Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cruz-Hernández JC, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu C. (2017) In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nature Methods. Apr;14(4):388-390. doi: 10.1038/nmeth.4183. Epub 2017 Feb 20. Link
- Quast KB, Ung K, Froudarakis E, Huang L, Garca I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR (2017). Developmental Broadening of Inhibitory Network Sensory Maps. Nature Neuroscience Dec 26. doi: 10.1038/nn.4467. Link
- Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes ML (2017). Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics. Neurophotonics. Jan;4(1):011002 Link
2016
- Reimer J, McGinley M, Liu Y, Rodenkirch C, Wang Q, McCormick D., Tolias AS (2016). Pupil Fluctuations Track Rapid Changes in the Adrenergic and Cholinergic Activity in Cortex. Nature Communications Nov 8;7:13289. dos: 10.1038/ncomms13289. Link
- Quast KB, Ung K, Froudarakis E, Huang L, Garca I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR (2016). Developmental Broadening of Inhibitory Network Sensory Maps. Nature Neuroscience Dec 26. doi: 10.1038/nn.4467. Link
- Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Berens P, Ecker AS, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Tolias AS (2016). Response to Comment on “Principles of connectivity among morphologically defined cell types in adult neocortex”. Science 353(6304):1108. doi: 10.1126/science.aaf6102. Link
- Denfield GH, Fahey PG, Reimer J, Tolias AS (2016). Investigating the Limits of Neurovascular Coupling. Neuron 7;91(5):954-6. doi: 10.1016/j.neuron.2016.08.026. Link
- L. Theis, P. Berens, E. Froudarakis, J. Reimer, M. Roman-Roson, T. Baden, T. Euler, A. S. Tolias, M. Bethge (2016): Benchmarking spike rate inference in population calcium imaging, Neuron 4:90(3):471-82 doi: 10.1016/j.neuron.2016.04.014. Link
- Rossant C, Shabnam KN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harri KD. Spike sorting for large, dense electrode arrays. Nature Neuroscience doi: 10.1038/nn.4268.
- Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R & Tolias AS (2016). Morphological, electrophysiological and transcriptomic profiling of single neurons using Patch-seq. Nature Biotechnology 34(2):199-203. doi: 10.1038/nbt.3445. Epub 2015 Dec 21. Link
- Ecker AS, Denfield GH, Bethge M, Tolias AS (2016). On the Structure of Neuronal Population Activity under Fluctuations in Attentional State. J Neurosci. 3:36(5):1775-89. doi: 10. 1523/JNEUROSCI.2044-15.2016. PMID: 26843656 Link
2015
- Jiang X, Shen S, Cadwell CR, Berens P, Sinz F, Ecker AS, Patel S & Tolias AS (2015). Principles of Connectivity among Morphologically Defined Cell Types in Adult Neocortex. Science. Vol. 350 no. 6264 DOI: 10.1126 Link
- McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA & McCormick DA. (2015). Waking State: Rapid Variations Modulate Neural and Behavioral Responses. Neuron. 2015 Sep 23;87(6). Link
- Yatsenko D, Josić K, Ecker AS, Froudarakis E, Cotton RJ, & Tolias, AS (2015). Improved Estimation and Interpretation of Correlations in Neural Circuits. PLoS Computational Biology, 11(3), e1004083-e1004083. Link | Code & data
- Ecker AS, Denfield GH, Bethge M & Tolias AS (2015). On the structure of neuronal population activity under fluctuations in attentional state. bioRxiv, 018226. Link
- Subramaniyan M, Ecker AS, Patel S, Cotton RJ, Bethge M, Berens P & Tolias AS (2015). Faster processing of moving compared to flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion. bioRxiv Link
- Yatsenko D, Reimer J, Ecker AS, Walker EY, Sinz F, Berens P, Hoenselaar A, Cotton RJ, Siapas AG &Tolias AS (2015). DataJoint: managing big scientific data using MATLAB or Python. bioRxiv Link
- Reddy GD, Cotton RJ, Tolias AS & Saggau P. (2015). Random-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging.Adv Exp Med Biol. 2015;859:455-72. Link
- Theis L, Berens P, Froudarakis E, Reimer J, Roman-Roson M, Baden, T, Euler T, Tolias AS, & Bethge, M. (2015). Supervised learning sets benchmark for robust spike detection from calcium imaging signals. bioRxiv, 010777. Link
2014
- Reimer, J., Froudarakis E., Cadwell, C.R., Yatsenko, D., Denfield, G.H., Tolias, A.S. (2014). Pupil Fluctuations Track Fast Switching of Cortical States during Quiet Wakefulness. Neuron. http://dx.doi.org/10.1016/j.neuron.2014.09.033
- Ecker A.S., Tolias A.S. (2014). Is there signal in the noise?. Nature Neuroscience. 17(6), 750-1
- Froudarakis E., Berens P., Ecker A.S., Cotton R.J., Sinz F.H., Yatsenko D., Saggau P., Bethge M., Tolias A.S. (2014). Population code in mouse V1 facilitates read-out of natural scenes through increased sparseness. Nature Neuroscience. 17(6), 851-7
- Ecker A.S., Berens P., Cotton R.J., Subramaniyan M., Denfield G.H., Cadwell C.R., Smirnakis S.M., Bethge M., Tolias A.S. (2014). State dependence of noise correlations in macaque primary visual cortex. Neuron. 82(1), 235–248. Link | Data & Code | PDF
2013
- Cotton R.J., Froudarakis E., Storer P., Saggau P., Tolias A.S. (2013). Three-dimensional mapping of microcircuit correlation structure. Front Neural Circuits. 10(7), 151. Link
- Subramaniyan M., Ecker A.S., Berens P., Tolias A.S. (2013). Macaque monkeys perceive the flash lag illusion. PLOS One 8(3). Link | Data
- Qamar A.T., Cotton R.J., George R.G., Beck J.M., Prezhdo E., Laudano A., Tolias A.S., Ma W.J. (2013). Trial-to-trial, uncertainty-based adjustment of decision boundaries in visual categorization. Proceedings of the National Academy of Sciences. 110(50), 20332-7. Link
2012
- Berens P., Ecker A.S., Cotton R.J., Ma W.J., Bethge M., Tolias A.S. (2012). A fast and simple population code for orientation in primate V1. Journal of Neuroscience 31(31): 10618-10636. Link | Code & data
- Beauchamp M.S., Sun P., Baum S.H., Tolias A.S., Yoshor D (2012). Electrocorticography Links Human Temporoparietal Junction to Visual Perception. Nature Neuroscience. 3;15(7):957-9
2011
- Ecker A.S., P. Berens, A. S. Tolias, M. Bethge: The effect of noise correlations in populations of diversely tuned neurons. Journal of Neuroscience. 31(40):14272-83. Link
- Sultan F., M. Augath, Y. Murayama, A.S. Tolias, N. K. Logothetis: esfMRI of the upper STS: further evidence for the lack of electrically induced polysynaptic propagation of activity in the neocortex. Magn Reson Imaging. 29(10):1374-81. Link
- Ku S. P., A. S. Tolias, N. K. Logothetis, J. Goense: FMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques. Neuron. 70(2):352-62. Link
- Berens, P., A. S. Ecker, S. Gerwinn, A. S. Tolias and M. Bethge: Reassessing optimal neural population codes with neurometric functions. Proceedings of the National Academy of Sciences 108(11), 4423-4428 Link
2010
- Keliris G. A., N. K. Logothetis, A. S. Tolias: The role of the primary visual cortex in perceptual suppression of salient visual stimuli. Journal of Neuroscience 30(37):12353-65. Link
- Ecker, A. S., P. Berens, G. A. Keliris, M. Bethge, N. K. Logothetis and A. S. Tolias: Decorrelated Firing in Cortical Microcircuits. Science, 327(5965), 584-587. Link | Data
2009
- Tehovnik E. J., W. M. Slocum, S. M. Smirnakis S. M., A. S. Tolias: Microstimulation of visual cortex to restore vision. Progress in Brain Research 175:347-75. Link
- Macke, J. H., P. Berens, A. S. Ecker, A. S. Tolias and M. Bethge: Generating Spike Trains with Specified Correlation Coefficients. Neural Computation 21(2), 397-423 Link
2008
- Berens, P., G. A. Keliris, A. S. Ecker, N. K. Logothetis and A. S. Tolias : Feature selectivity of the gamma-band of the local field potential in primate primary visual cortex. Frontiers in Neuroscience 2(2), 199-207; Focused Review Link
- Berens, P., G. A. Keliris, A. S. Ecker, N. K. Logothetis and A. S. Tolias: Comparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex. Frontiers in Systems Neuroscience 2(2) Link
- Goense J. B., S. P. Ku, H. Merkle, A. S. Tolias, N. K. Logothetis: fMRI of the temporal lobe of the awake monkey at 7 T. Neuroimage 39(3):1081-93. Link
2007
- A. S. Tolias, A. S. Ecker, A. G. Siapas, A. Hoenselaar, G. A. Keliris, N. K. Logothetis: Recording chronically from the same neurons in awake, behaving primates. Journal of Neurophysiology 98(6):3780-90. Link
For older publications, go to Pubmed.